Fluffy & Flavorful Almond Flour Blackberry Muffins (Gluten-Free, Dairy-Free, Paleo & Low-Carb)
Welcome to your new favorite healthy treat! These exquisite almond flour blackberry muffins boast a beautiful golden-brown top, a soft and moist interior, and an irresistible fluffiness. Crafted to meet various dietary needs, they are completely gluten-free, dairy-free, Paleo-friendly, and naturally low in carbohydrates. Each bite is a delightful burst of sweet blackberries complemented by subtle notes of vanilla, making them incredibly easy to prepare and ready to enjoy in just 30 minutes.
Baking with almond flour is a rewarding experience, often leading to wonderfully moist and tender results. If you love these muffins, be sure to explore more of our almond flour creations, such as my popular Paleo almond flour biscuits and delightful almond flour blueberry lemon bread. They are perfect for expanding your repertoire of wholesome, grain-free baking!

Healthy muffins, especially these almond flour blackberry gems, are truly a staple in my kitchen. They’re not just a delicious indulgence; they’re incredibly versatile, making them perfect for a quick breakfast, a satisfying addition to lunchboxes, or a wholesome snack any time of day. My daughters adore finding these in their lunches as a tasty alternative to traditional sandwiches, and I have peace of mind knowing they’re enjoying something made with simple, nutrient-rich ingredients.
Muffins are also fantastic for meal prep! I frequently bake a batch of muffins almost every week to ensure we always have healthy options on hand. When we’re not savoring these delectable blackberry muffins, you’ll likely find us enjoying my other family favorites like gluten-free banana muffins, gluten-free mini chocolate chip muffins, protein banana muffins, or our comforting apple cinnamon oat muffins. The possibilities are endless for wholesome, homemade goodness!
Why You’ll Fall in Love with These Healthy Blackberry Muffins
Beyond their delicious taste and comforting texture, these almond flour blackberry muffins offer a wealth of benefits that make them a standout recipe. Here’s why they’re sure to become a cherished part of your healthy eating routine:
- Low Sugar and Low Carb: Unlike conventional muffins loaded with refined sugars and high-carb flours, our recipe contains only 5 grams of added sugar per serving. This makes them a significantly healthier choice for managing blood sugar levels and adhering to a low-carb lifestyle without sacrificing flavor.
- Accommodates Many Dietary Needs: These muffins are a true triumph for inclusive eating. Naturally gluten-free, dairy-free, and Paleo-compliant, they are crafted using only clean, wholesome ingredients. This means almost everyone can enjoy a delicious treat without compromising their dietary goals or triggering common sensitivities.
- Effortless to Make: Simplicity is key in our kitchen! You’ll be delighted to know that this recipe requires just one bowl for mixing, significantly cutting down on cleanup time. From start to oven, these muffins are ready in a mere 10 minutes, making them perfect for busy mornings or spontaneous baking sessions.
- Achieves Perfect Texture Every Time: Prepare for muffin perfection! These treats are incredibly soft, wonderfully fluffy, and delightfully moist. They boast that classic golden-brown, slightly pebbly top that all great muffins should have, promising a satisfying bite with every single one.
Essential Ingredients for Your Blackberry Muffins
Crafting these delectable almond flour blackberry muffins starts with a selection of simple, high-quality ingredients. Each component plays a crucial role in achieving the perfect flavor and texture, while also adhering to specific dietary requirements. Gather these essentials, and you’ll be well on your way to baking success!

Ingredient Notes & Smart Substitutions
For a full, detailed list of ingredients and their exact measurements, please refer to the comprehensive recipe card located further down. Below, you’ll find important notes and helpful substitution tips to ensure your baking experience is seamless and successful.
ALMOND FLOUR: This is the cornerstone of our gluten-free muffins. It is crucial to use **finely ground almond flour**, not almond meal. The key difference lies in the skin: almond flour is made from blanched almonds (skin removed) and finely ground, resulting in a light, fine texture that yields fluffy baked goods. Almond meal, on the other hand, is made from unblanched almonds (skin on) and is more coarsely ground, which can lead to a denser, grittier texture in your muffins. Always opt for finely ground almond flour for the best results.
TAPIOCA FLOUR: Also widely known as tapioca starch, this ingredient acts as a fantastic binder and helps achieve that desirable chewy texture often missing in gluten-free baking. It contributes to the muffins’ light and airy structure. If you don’t have tapioca flour, **arrowroot starch** can be used as a direct 1:1 substitute, offering similar binding properties.
COCONUT OIL: We use melted coconut oil to add moisture and a delicate richness to these muffins. It’s an excellent dairy-free fat source that keeps the muffins wonderfully tender. Alternatively, you can successfully substitute it with **avocado oil**, which is another healthy fat that works well in baking and has a neutral flavor profile. Learn more about choosing the right coconut oil for your baking needs here.
EGGS: Eggs are vital for structure, binding, and providing lift to these muffins. For optimal rise and a perfectly smooth batter, I highly recommend using **room temperature eggs**. Cold eggs can cause the melted coconut oil to seize up and make the batter dense. To quickly bring eggs to room temperature, simply place them in a bowl of warm (not hot) water for 5-10 minutes before you start mixing your ingredients. For more insights on egg labels and choices, check out our guide here.
APPLE CIDER VINEGAR: A small amount of apple cider vinegar (ACV) might seem unusual, but it plays a crucial role! When combined with baking soda, it creates a chemical reaction that produces carbon dioxide bubbles, helping the muffins rise beautifully and achieve their fluffy texture. **Fresh lemon juice** can be used as a substitute if you don’t have ACV on hand. While omitting it entirely is possible, be aware that your muffins may not rise as much or be as light and airy.
UNSWEETENED DAIRY-FREE MILK: To maintain the Paleo guidelines and keep these muffins dairy-free, I typically use unsweetened almond milk. Unsweetened coconut milk is another excellent Paleo-approved option that provides a lovely rich flavor. If your diet doesn’t require Paleo compliance, feel free to use regular cow’s milk. Always ensure your chosen dairy-free milk is unsweetened and free from unnecessary additives.
Clean food tip: When selecting dairy-free milk alternatives like almond milk, always double-check the ingredient list to confirm there are no added sugars, gums, or artificial preservatives. Brands like Malk Organics and Elmhurst 1925 are fantastic choices known for their minimalist and pure ingredient lists.
Delicious Variations to Customize Your Muffins
The beauty of this almond flour muffin base is its incredible versatility. While delicious with blackberries, it serves as a perfect canvas for a multitude of other flavors. Don’t hesitate to get creative and tailor these muffins to your personal taste or what you have on hand!
**Swap the Berries:** Don’t have blackberries? No problem at all! This recipe works beautifully with other berries. Try using **fresh or frozen blueberries, raspberries, or chopped strawberries** instead. If using frozen berries, there’s no need to thaw them; simply fold them into the batter as is, but be mindful that they might release a bit more liquid and slightly tint your batter.
**Add a Zesty Twist with Lemon:** For an invigorating and bright flavor profile, transform these into lemon blackberry muffins. Simply add the **zest of one lemon** (about 1-2 teaspoons) and **2 tablespoons of fresh lemon juice** to the wet ingredients. The lemon perfectly complements the sweetness of the blackberries and adds a lovely tang.
**Embrace Almond-on-Almond:** Enhance the nutty essence of these muffins! Top them with a sprinkle of **sliced almonds** before baking for an added crunch and visual appeal. You can also fold a handful of sliced almonds directly into the batter for texture throughout. For an even more intense almond flavor, swap out the vanilla extract for **1 teaspoon of pure almond extract** to create truly delightful almond blackberry muffins.
**Indulge in Chocolate Chip Goodness:** If you’re craving a classic combination, skip the fruit entirely and fold in **½ cup of your favorite chocolate chips**. Dark chocolate chips or dairy-free chocolate chips can be used. *A quick note: if you use conventional chocolate chips, these muffins will no longer be considered Paleo-approved, though they will still be gluten-free and dairy-free.*
Step-by-Step: How to Bake Perfect Almond Flour Blackberry Muffins
Making these delicious and healthy muffins is incredibly straightforward. With just one bowl and a few simple steps, you’ll have a batch of warm, fragrant muffins ready to enjoy in no time. Follow these instructions for baking success!

Step 1: Combine Dry & Wet Ingredients. In a large mixing bowl, thoroughly whisk together all the dry ingredients. Once combined, create a small well in the center. Pour all the wet ingredients into this well, preparing them for the next step.

Step 2: Mix the Batter. Start by whisking the eggs into the other wet ingredients within the well. Once lightly combined, gently mix all the ingredients (wet and dry) together until a smooth, uniform batter forms. Be careful not to overmix, as this can lead to tougher muffins.

Step 3: Fold in the Blackberries. Carefully add your sliced or whole blackberries to the batter. Using a spatula, gently fold them in. The key here is to distribute the berries evenly without crushing them, which can tint your batter purple and make the muffins too wet.

Step 4: Bake to Golden Perfection. Evenly divide the muffin batter among the 12 cavities of your prepared muffin tin. Bake in a preheated oven at 350°F (175°C) for 20-22 minutes, or until the tops are golden brown and a toothpick inserted into the center comes out clean.
Can This Muffin Recipe Be Made Keto-Friendly?
As written, this delicious almond flour blackberry muffin recipe is **not strictly keto**. While it is significantly lower in carbohydrates compared to traditional muffins made with wheat flour and refined sugar, the inclusion of tapioca flour and maple syrup means it doesn’t meet the strict carbohydrate limits for a ketogenic diet.
However, if you’re aiming for a keto-friendly version, it’s quite simple to adapt! You can **omit the tapioca flour entirely** – though be aware this might slightly change the texture, making it a bit less airy. Crucially, you’ll need to **replace the pure maple syrup with a keto-approved 1:1 liquid sweetener**. Excellent choices include erythritol-based liquid sweeteners like Swerve, or monk fruit sweeteners. These alternatives will allow you to enjoy the wonderful flavors of these blackberry muffins while keeping your carb count low enough for a ketogenic lifestyle.

Common Questions About These Blackberry Muffins
For the absolute best results, always opt for **finely ground almond flour**. This type of almond flour is made from blanched almonds (without their skins) and has a consistently fine texture that creates light, fluffy, and moist baked goods. It’s important to distinguish this from almond meal, which is coarser and includes the almond skins, leading to a denser texture in your muffins. Always opt for finely ground almond flour for the best results.
While fresh blackberries are recommended as they tend to release less liquid during baking, you can certainly use frozen berries if that’s what you have! There’s no need to thaw them beforehand; simply fold them into the batter while frozen. Just be aware that frozen berries may release more moisture, which could result in a slightly more purple tint throughout your muffins, but they will still be delicious.
The decision to cut your blackberries depends on their size. If your blackberries are quite large, I highly recommend slicing them in half. This ensures a better, more even distribution of fruit throughout each muffin, preventing large pockets of berries and allowing for a balanced flavor in every bite. For smaller blackberries, you can comfortably leave them whole.
Almond flour is a powerhouse of nutrients compared to traditional wheat flour. It’s an excellent source of healthy fats, particularly monounsaturated fats, and is rich in essential vitamins and minerals like Vitamin E (a powerful antioxidant), manganese, and magnesium. Additionally, it offers a good amount of protein and fiber, making it a more satiating and nutrient-dense choice. Its low-carb profile also makes it a popular alternative for those managing blood sugar or following specific dietary plans.
A dense muffin can often be attributed to overmixing the batter or using cold ingredients. When mixing, gently combine the wet and dry ingredients just until no streaks of flour remain; overmixing develops gluten (even in gluten-free flours like almond flour to some extent, leading to toughness) and knocks out air. Also, ensure your eggs and dairy-free milk are at room temperature, as cold ingredients can cause the melted coconut oil to solidify and create a heavier batter.
Yes, you can certainly experiment with other liquid sweeteners. While maple syrup provides a lovely subtle flavor and helps with moisture, you could try honey for a different sweetness profile. For low-carb or keto alternatives, liquid stevia, erythritol, or monk fruit sweeteners (as mentioned in the keto section) are suitable. Always adjust the amount to your taste and consider how the substitute might affect the overall moisture content of the muffins.

Storage Tips for Optimal Freshness
To keep your delicious almond flour blackberry muffins fresh and enjoyable for longer, proper storage is key. Because these muffins are made with wholesome, natural ingredients and no artificial preservatives, their shelf life differs slightly from conventional baked goods.
These blackberry muffins are best **stored in an airtight container** at room temperature for up to 2 days. For extended freshness, especially in warmer climates, it’s highly recommended to store them in the refrigerator. When retrieving from the fridge, allow them to sit at room temperature for 10-15 minutes to soften, or for a quick warm treat, pop them into the microwave for 15-20 seconds. They taste amazing slightly warmed!
For long-term storage, these muffins **freeze beautifully**! Place cooled muffins in a single layer in an airtight freezer-safe bag or container, separating layers with parchment paper if stacking. They can be stored in the freezer for up to 3 months. When you’re ready to enjoy, simply thaw them at room temperature or gently warm them for a few minutes in the oven or microwave.

Chef’s Expert Tips for Muffin Perfection
Achieving bakery-quality almond flour muffins is easier than you think with a few insider tips. These simple techniques will elevate your baking and ensure your blackberry muffins turn out perfectly every time:
**Accurate Almond Flour Measurement:** When measuring almond flour, it’s crucial to use the “scoop and level” method. Gently **scoop the almond flour into your measuring cup** and then level it off with a straight edge (like the back of a knife). Do **NOT pack it down**, as this will result in too much flour, leading to dry and dense muffins.
**Gentle Berry Folding:** The key to beautiful, vibrant muffins is to **gently fold the blackberries** into the batter. If you’re new to this technique, use a wide spatula to scrape around the outside of the bowl and then underneath the batter, lifting and folding it over the berries a few times until they are just incorporated. Avoid vigorous mixing, which can crush the delicate berries and turn your entire batter an unappetizing purple color.
**Utilize Room Temperature Eggs:** This seemingly small detail makes a significant difference. **Using room temperature eggs helps the batter rise more effectively** during baking, contributing to a lighter and fluffier muffin texture. If you forget to take your eggs out in advance, simply run them under warm tap water for 1-2 minutes to quickly bring them to temperature.
**Achieve Perfect Muffin Tops:** For beautifully rounded, professional-looking muffin tops, a **spring-loaded cookie scoop** is your secret weapon! It helps you divide the batter evenly and create consistent mounds, which encourages that perfect domed shape as they bake. If you don’t have one, two spoons can work just as well for carefully scooping.
**Patience with Cooling:** Almond flour baked goods are inherently more delicate than those made with traditional wheat flour. It’s essential to **allow your muffins to cool sufficiently** in the muffin pan before attempting to remove them. This gives them time to set and firm up, preventing them from crumbling or sticking.
Discover More Wholesome Almond Flour Recipes!
If you’ve enjoyed the versatility and deliciousness of baking with almond flour in these blackberry muffins, you’ll be thrilled to explore our other fantastic recipes that celebrate this healthy, gluten-free flour. Expand your repertoire with more clean-eating treats:
- Paleo Almond Flour Donuts
- Paleo Almond Flour Biscuits
- Almond Flour Blueberry Lemon Bread
- Almond Flour Biscotti
If you make this amazing almond flour blackberry muffin recipe, please **let me know what you think**! Your feedback is invaluable. I would so appreciate you leaving a star rating and/or comment below to share your experience. And don’t forget to share a photo of your beautiful creations on Instagram or Facebook and mention @CleanPlateMama! Let’s inspire each other with delicious, healthy eats!
Eat Clean. Be Well!
-Sara

Almond Flour Blackberry Muffins
Print
Pin
Rate
Save This Recipe For Later!
We’ll email this post to you, so you can come back to it later. Plus, enjoy weekly clean eating recipes as a bonus.
Equipment
-
1 Mixing bowl
-
1 12-cup muffin pan
Ingredients
- 2 ½ cups almond flour
- ½ cup tapioca flour
- ¼ cup coconut flour
- 1 tsp. baking soda
-
¼
tsp. fine sea salt
- 3 eggs (room temp)
- ¼ cup coconut oil, melted
- ¼ cup dairy-free milk
- ⅓ cup pure maple syrup
- 1 tbsp. apple cider vinegar
- 1 tsp. pure vanilla extract
- 1 cup sliced blackberries
Instructions
-
Preheat oven to 350 degrees. Lightly grease a 12-cup muffin pan, or line cups with muffin liners. Set aside.
-
In a large mixing bowl, combine the almond flour, tapioca flour, coconut flour, baking soda, and salt.
-
Make a well in the center of the dry ingredients and add in the eggs, coconut oil, dairy-free milk, maple syrup, apple cider vinegar, and vanilla. Whisk the wet ingredients together first, and then mix in with the dry ingredients until all ingredients are fully combined.
-
Add sliced blackberries and fold them into the batter.
-
Scoop batter evenly into the prepared muffin pan.
-
Bake for 20-22 minutes, or until muffins are light brown on top and a toothpick inserted in the center comes out clean.
-
Allow muffins to cool before removing from the pan. Enjoy!
Notes
- Scoop almond flour into measuring cup to measure – don’t pack almond flour down.
- If you don’t have room temp eggs, simply run them under hot water for 1-2 minutes to bring to room temp.
- If your blackberries are on the larger side, I recommend slicing them in half before adding to the batter.
- If you have a spring loaded cookie scoop, use that for scooping muffin batter into the pan.
- These will stay fresh for up to 3 days stored in an airtight container. Store in the fridge or freezer to extend freshness.
Nutrition