Grab-and-Go Pumpkin Breakfast Cookies

Healthy Pumpkin Breakfast Cookies: Easy, Nutritious, and Bursting with Fall Flavor

Embrace the cozy flavors of autumn with these soft, chewy, and incredibly delicious pumpkin breakfast cookies! Crafted with wholesome, nutritious ingredients like hearty oats, fiber-rich ground flaxseeds, and protein-packed peanut butter, they offer a healthy and satisfying way to enjoy the classic taste of pumpkin desserts. Whether you need a quick grab-and-go breakfast or a wholesome afternoon pick-me-up, these cookies are a perfect choice for the whole family.

Soft and chewy pumpkin breakfast cookies with chocolate chips on a wire cooling rack, ready to be enjoyed.

As the leaves begin to change and the air turns crisp, nothing signals the start of fall quite like the aroma of pumpkin spice filling your kitchen. These delightful pumpkin breakfast cookies are a staple in my autumn food prep routine. Much like my beloved healthy breakfast cookies, this recipe is brimming with wholesome ingredients designed to fuel your day. They are ideal served alongside some fried (or hard-boiled) eggs and a handful of fresh berries for a truly easy and protein-rich breakfast. An added bonus? My kids absolutely adore them, and I find immense satisfaction in knowing they’re starting their day with real, nourishing food!

If you’re eager to explore more real food and healthy pumpkin recipes, you absolutely must try some of my other fall favorites. Don’t miss out on my gluten-free pumpkin scones, moist Paleo pumpkin muffins, crunchy pumpkin granola recipe, and the ever-popular chocolate chip pumpkin bread. Each one brings the comforting essence of fall to your table in a healthy way.

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Why You’ll Fall in Love with These Pumpkin Breakfast Cookies

These aren’t just any cookies; they’re a celebration of health, convenience, and delicious fall flavors. Here are just a few reasons why these pumpkin breakfast cookies will become a new favorite in your home:

  • Irresistible Fall Flavors: Every bite transports you to a cozy autumn day. The warm notes of cinnamon perfectly blend with the sweet, earthy essence of pumpkin spice, creating a comforting taste that’s simply delightful. It’s all the joy of fall baking, wrapped up in a convenient cookie.
  • Effortless One-Bowl Preparation: Say goodbye to stacks of dirty dishes! Just like my easy gluten-free dairy-free waffles, this cookie recipe is designed for minimal cleanup. All the ingredients come together in a single bowl, making the baking process quick, simple, and perfect for even the busiest mornings or novice bakers.
  • Packed with Clean Eating Ingredients: You won’t find any refined flours or excessive sugars here! These cookies are crafted with whole grains like oats and oat flour, ensuring a nourishing start to your day. Plus, they boast an excellent nutritional profile, offering a significant boost of fiber, protein, and healthy fats from the ground flaxseeds and natural peanut butter. It’s wholesome goodness you can feel good about.
  • Perfect for Meal Prep: These cookies are incredibly convenient for busy schedules. Whip up a batch (or double it!) at the beginning of the week, and you’ll have a healthy, pre-portioned breakfast or snack ready to go. They hold up beautifully, making morning routines smoother and healthier.
  • Kid-Friendly and Approved: Getting kids to eat a nutritious breakfast can be a challenge, but these cookies are a guaranteed hit. They taste like a treat, but you’ll know they’re packed with real food, helping your little ones start their day on the right foot with essential nutrients.

Ingredients & Substitutions: Crafting Your Perfect Pumpkin Cookie

Creating these wholesome pumpkin breakfast cookies starts with selecting the right ingredients. Here’s a visual guide to what you’ll need, followed by some specific notes and substitution ideas to ensure your baking success.

Labeled ingredients for pumpkin breakfast cookies laid out on a white surface.

A complete list of ingredients and their exact amounts can be found in the detailed recipe card below. These notes offer additional guidance for selecting high-quality components and making simple adjustments.

  • Rolled Oats (Old-Fashioned Oats): These provide the ideal texture and hearty base for our cookies. If you’re baking for someone with a gluten sensitivity or celiac disease, it’s crucial to use certified gluten-free oats. While oats are naturally gluten-free, they can often be cross-contaminated with wheat during processing in shared facilities. Opting for certified options ensures safety and peace of mind.
  • Canned Pumpkin: Ensure you are using pure pumpkin puree, not pumpkin pie filling. Pumpkin pie filling contains added sugars and spices, which would alter the flavor and health profile of these cookies. Always double-check the ingredient list; the only ingredient should be “pumpkin.”
  • Peanut Butter: This ingredient adds healthy fats and protein, contributing to the rich texture and satiety of the cookies. You have flexibility here; feel free to use any natural nut butter you prefer, such as almond butter or cashew butter. If you need these cookies to be nut-free due to allergies, sunflower seed butter (SunButter) is an excellent substitute that maintains a similar consistency and nutritional value.
  • Oat Flour: I personally love using homemade oat flour because it’s a whole grain and incredibly easy to make from rolled oats. If you don’t have oat flour on hand, you can substitute with regular all-purpose flour, whole wheat flour, or a gluten-free all-purpose blend. Again, if gluten-free is a necessity, make sure your oat flour (or chosen substitute) is certified gluten-free.
  • Maple Syrup: This natural sweetener provides just the right amount of sweetness without any refined sugars. Its subtle caramel notes also complement the pumpkin and spices beautifully.
  • Eggs: Act as a binder, holding all the ingredients together and contributing to the chewy texture. (See FAQ for vegan substitution.)
  • Pumpkin Pie Spice & Cinnamon: These ground spices are essential for that signature fall flavor. Feel free to adjust the quantities to your preference, adding a little extra if you love a bolder spice profile.
  • Baking Powder & Fine Sea Salt: Crucial for the cookies’ rise and to balance the flavors, enhancing the overall taste.
  • Chocolate Chips: A delightful addition that makes these cookies feel even more like a treat. Opt for high-quality, dairy-free, or lower-sugar options if desired.

Clean Food Tips for Optimal Health:

  • I highly recommend using organic oats. Unfortunately, like many grains, conventional oats are often sprayed with glyphosate (a controversial herbicide linked to increased cancer risk and potential hormone disruption) just before harvesting. Choosing organic significantly reduces your exposure.
  • When selecting chocolate chips, look for brands with minimal ingredients: ideally just sugar, chocolate liquor (cocoa mass), and cocoa butter. Avoid those with artificial flavors, excessive added sugars, or unhealthy oils. My personal favorite brands for clean chocolate chips include Equal Exchange Organic Semi-Sweet Chocolate Chips, Hu Chocolate, and Pascha.
  • For nut butter, always aim for varieties that contain just one or two ingredients: the nuts themselves, and perhaps a touch of salt. Steer clear of brands that include added oils (like palm oil) or sugars. Costco’s organic peanut butter is a fantastic, clean option, and Once Again is another excellent choice known for its quality and simplicity.

Step-by-Step Directions for Easy Pumpkin Breakfast Cookies

Making these nutritious cookies is incredibly straightforward. Follow these simple steps, and you’ll have a batch of warm, delicious pumpkin cookies ready in no time!

Wet ingredients for pumpkin breakfast cookies being whisked together in a medium-sized mixing bowl.

Step 1: Before you begin, preheat your oven to 350°F (175°C) and line a cookie sheet with parchment paper. Then, in a medium-sized mixing bowl, whisk together all your wet ingredients until smooth and well combined.

Pumpkin breakfast cookie dough in a mixing bowl, being mixed with a wooden spoon.

Step 2: Add the remaining dry ingredients to the bowl with the wet mixture (holding back the chocolate chips for now). Mix thoroughly until the oats are fully incorporated and a thick, uniform “dough” has formed. Make sure there are no dry pockets.

Chocolate chips being folded into pumpkin breakfast cookie dough with a spatula.

Step 3: Gently fold in the chocolate chips until they are evenly distributed throughout the cookie dough. Don’t overmix at this stage.

Scoops of pumpkin breakfast cookie dough placed on a prepared baking sheet.

Step 4: Using a spring-loaded cookie scoop (a heaping 2 tablespoons of dough per cookie works best for consistent sizing), scoop balls of dough onto your prepared cookie sheet, leaving a little space between each.

Raw pumpkin breakfast cookie dough shaped into perfectly round cookies on a baking sheet.

Step 5: These cookies won’t spread much in the oven, so take a moment to shape them. Lightly wet your hands and gently flatten each dough ball into your desired round cookie shape. This step ensures a perfect, uniform cookie every time.

Baked pumpkin breakfast cookies on a baking sheet, golden brown and perfectly cooked.

Step 6: Bake your cookies in the preheated oven for about 12 minutes, or until the edges appear set and the cookies are semi-firm to the touch. Once baked, allow them to cool slightly on the baking sheet before transferring to a wire rack.

Expert Tips for Perfect Pumpkin Breakfast Cookies

Unlock the secrets to baking the most delicious and perfectly textured pumpkin breakfast cookies with these helpful tips from a seasoned home baker:

  • Double the Recipe for Easy Meal Prep: This recipe yields 12 cookies, which can disappear quickly! I highly recommend you double the recipe. Having extra on hand makes breakfast or snack time incredibly convenient throughout the week, and they freeze beautifully for even longer enjoyment.
  • Customize with Additional Add-ins: While chocolate chips are a delicious standard, feel free to get creative! For a more hearty and nutrient-dense cookie, try incorporating other wholesome additions like chopped walnuts, pecans, pumpkin seeds (pepitas), or unsweetened craisins. If you’re looking to reduce added sugars further, you can even omit the chocolate chips entirely.
  • Tame Sticky Dough with Wet Hands: The cookie dough will be quite sticky, which is normal for a moist, healthy cookie. To prevent it from clinging to your hands while shaping, simply lightly wet your hands with water before flattening or forming the dough balls into their desired cookie shape. This simple trick makes the process much easier and cleaner.
  • Utilize a Spring-Loaded Cookie Scoop: For consistent cookie size and effortless portioning, a spring-loaded cookie scoop is your best friend. A 2-tablespoon sized scoop works perfectly for this recipe, ensuring uniform cookies that bake evenly.
  • Enhance with a Coconut Butter Glaze: For an extra touch of decadence and a hint of sweetness, consider drizzling some homemade coconut butter glaze over the cooled cookies. It adds a lovely aesthetic and an additional layer of flavor.
  • Don’t Expect Spreading: Unlike traditional cookies, these breakfast cookies will hold their shape during baking. This means the shape you form them into on the baking sheet is the shape they will keep. So, ensure you flatten them sufficiently if you prefer a wider, thinner cookie.
A selection of pumpkin breakfast cookies, with one bite taken out, resting on a rectangular wire cooling rack.

How to Store and Freeze Your Pumpkin Breakfast Cookies

These healthy pumpkin breakfast cookies are fantastic for meal prep because they store and freeze so well. Here’s how to keep them fresh and delicious:

Storing: Once the cookies have fully cooled, transfer them to an airtight container. They will stay fresh and soft on your kitchen counter for up to 3 days. For a delightfully warm and soft cookie experience, you can gently heat them in the microwave for about 10-15 seconds before enjoying.

Freezing: These cookies are excellent candidates for freezing, making them perfect for batch cooking. Simply place the completely cooled cookies in a freezer-safe container or a heavy-duty freezer bag. They can be frozen for up to 3 months. When you’re ready to enjoy, you can thaw them at room temperature for an hour or two, or briefly warm them in the microwave for a fresh-baked feel. This is another great reason to make a double batch!

Recipe FAQs: Your Questions Answered

Is pumpkin puree the same as canned pumpkin?

Yes, absolutely! Pumpkin puree and canned pumpkin are indeed the same product – 100% pure cooked pumpkin. However, it’s essential to distinguish this from pumpkin pie filling. Pumpkin pie filling is a pre-mixed product that contains added sugars, spices, and sometimes other ingredients, designed for convenience in making pies. For this recipe, and for most healthy pumpkin recipes, you should always use plain pumpkin puree (canned pumpkin) where the only ingredient listed is “pumpkin.” This allows you to control the sweetness and flavor profile of your cookies.

What’s the difference between a breakfast cookie and a regular cookie?

The primary difference lies in their nutritional composition and intended purpose. Breakfast cookies are specifically designed to be a more wholesome and nutrient-dense option suitable for the first meal of the day or a healthy snack. They are typically made with a focus on whole grains (like oats), healthy fats (from nuts or seeds), fiber, and protein. Crucially, they contain significantly less sugar, oil, and/or butter compared to a classic dessert cookie. The goal of a breakfast cookie is to provide sustained energy and satiety, whereas a regular cookie is generally a sweet treat without the same nutritional focus.

Can I make these pumpkin breakfast cookies vegan?

Yes, these pumpkin breakfast cookies can easily be adapted to be vegan-friendly! The main ingredient to substitute is the eggs. You can effectively replace the two eggs with an egg substitute, such as two flax eggs (made by mixing 2 tablespoons of ground flaxseed meal with 5-6 tablespoons of water and letting it sit to thicken). Additionally, ensure that the chocolate chips you choose are certified dairy-free and vegan. Excellent vegan chocolate chip options include Equal Exchange and Enjoy Life. With these simple adjustments, you can enjoy a delicious plant-based breakfast cookie.

Three pumpkin breakfast cookies stacked vertically, showing their soft texture and chocolate chips.

More Wholesome Fall Recipes To Try

As you savor the flavors of these pumpkin breakfast cookies, explore other delicious and healthy recipes that celebrate the bounty of the fall season. Each of these dishes is designed to be nourishing, flavorful, and perfect for autumn gatherings or comforting weeknight meals.

  • Harvest Chicken Apple Sausage Sheet Pan Dinner
  • Apple Cinnamon Baked Oatmeal
  • Homemade Pumpkin Granola (gluten free + vegan)
  • Roasted Butternut Squash Salad w/ Goat Cheese and Kale

If you make this delicious and healthy pumpkin breakfast cookie recipe, please let me know what you think! I would so appreciate you leaving a star rating and/or comment below to share your experience. And don’t forget to share a photo of your creations on Instagram or Facebook and mention @CleanPlateMama! Your feedback and shares truly help others discover these wholesome recipes.

Eat Clean. Be Well!
-Sara

Pumpkin breakfast cookies with chocolate chips on a wire cooling rack.

Pumpkin Breakfast Cookies

These are truly the best pumpkin breakfast cookies, made with a blend of wholesome and nutritious ingredients like hearty oats, fiber-rich ground flaxseeds, and creamy peanut butter. It’s a deliciously healthy way to enjoy the comforting and classic flavors of pumpkin desserts. Perfect to savor as a fulfilling part of your breakfast, or as a guilt-free and energizing afternoon treat.

5 from 10 votes

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Course: Breakfast, Snack
Cuisine: American
Diet: Gluten Free
Prep Time: 13 minutes
Cook Time: 12 minutes
Total Time: 25 minutes
Servings: 12 cookies
Author: Sara

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Equipment

  • 1 Mixing bowl
  • 1 Baking sheet

Ingredients

  • ½ cup pumpkin puree
  • 2 eggs
  • 3 tbsp. pure maple syrup
  • cup natural peanut butter
  • 1 tsp. pure vanilla extract
  • 1 cup oats (certified gluten-free if needed, see “Clean Food Tips” above for details)
  • ½ cup oat flour (certified gluten-free if needed)
  • ½ cup flaxseed meal (also called ground flaxseeds)
  • 1 tsp. baking powder
  • ¼ tsp. fine sea salt
  • 1 ½ tsp. pumpkin pie spice
  • ½ tsp. ground cinnamon
  • cup chocolate chips

Instructions

  • Preheat your oven to 350-degrees F (175°C). Line a standard cookie sheet with parchment paper to prevent sticking and for easy cleanup. Set the prepared cookie sheet aside for later use.
  • In a medium-sized mixing bowl, combine the pumpkin puree, eggs, pure maple syrup, natural peanut butter, and pure vanilla extract. Whisk these wet ingredients together until they are smooth, creamy, and thoroughly incorporated.
  • Now, add the dry ingredients to the wet mixture: rolled oats, oat flour, flaxseed meal, baking powder, fine sea salt, pumpkin pie spice, and ground cinnamon. Mix everything together until all the oats and dry ingredients are fully combined and a thick, cohesive “dough” has formed. Finally, gently fold in the chocolate chips until they are evenly distributed throughout the dough.
  • Using a spring-loaded cookie scoop (a heaping 2 tablespoons of dough per cookie works best for uniform size), scoop balls of dough onto the prepared cookie sheet. You should yield about 12 cookies from this recipe. Lightly wet your hands, then gently press and shape each dough ball into a flat, round cookie shape. Remember, these cookies won’t spread much during baking, so shape them precisely how you’d like your final cookies to look.
  • Bake the cookies for 12 minutes in the preheated oven, or until their edges are lightly set and the cookies feel semi-firm to the touch. Avoid overbaking to keep them soft and chewy.
  • Once baked, remove the cookie sheet from the oven and allow the cookies to cool slightly on the sheet for a few minutes before transferring them to a wire rack to cool completely. Enjoy your healthy and delicious pumpkin breakfast cookies!

Notes

  • The dough for these cookies will be naturally sticky. To make handling and shaping easier, simply moisten your hands with a little water before forming the dough balls into cookie shapes. This prevents the dough from sticking and allows for smooth, easy shaping.
  • For that irresistible “bakery-style” appeal, reserve a few chocolate chips (or any other desired add-ins like pumpkin seeds) and press them gently onto the tops of the formed cookies just before baking. This makes them look even more appetizing!
  • Store your cooled pumpkin breakfast cookies in an airtight container at room temperature. They will remain wonderfully fresh and soft for up to 3 days. These cookies also freeze exceptionally well, so consider making a double batch to have a stash ready for quick breakfasts or snacks anytime.

Nutrition Information

(Based on 12 servings)

Calories: 177kcal | Carbohydrates: 19g | Protein: 6g | Fat: 9g | Saturated Fat: 2g | Polyunsaturated Fat: 3g | Monounsaturated Fat: 3g | Trans Fat: 0.01g | Cholesterol: 28mg | Sodium: 132mg | Potassium: 183mg | Fiber: 4g | Sugar: 7g | Vitamin A: 1642IU | Vitamin C: 1mg | Calcium: 74mg | Iron: 2mg
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